Dr Alan Garny

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Software Developer

Selected publications and creative works (Research Outputs)

  • Neal, M. L., König M, Nickerson, D., Mısırlı G, Kalbasi, R., Dräger A, ... Cook, D. L. (2019). Harmonizing semantic annotations for computational models in biology. Briefings in bioinformatics, 20 (2), 540-550. 10.1093/bib/bby087
    Other University of Auckland co-authors: David Nickerson, Koray Atalag
  • de Boer, T. P., van der Werf, S., Hennekam, B., Nickerson, D. P., Garny, A., Gerbrands, M., ... van Rijen, H. V. M. (2017). eSolv, a CellML-based simulation front-end for online teaching. Advances in physiology education, 41 (3), 425-427. 10.1152/advan.00127.2016
    URL: http://hdl.handle.net/2292/44113
    Other University of Auckland co-authors: David Nickerson
  • Hucka, M., Nickerson, D. P., Bader, G. D., Bergmann, F. T., Cooper, J., Demir, E., ... Schreiber, F. (2015). Promoting coordinated development of community-based information standards for modeling in biology: The COMBINE initiative. Front Bioeng Biotechnol, 310.3389/fbioe.2015.00019
    Other University of Auckland co-authors: David Nickerson
  • Garny, A., & Hunter, P. J. (2015). OpenCOR: A modular and interoperable approach to computational biology. Frontiers in Physiology, 610.3389/fphys.2015.00026
    Other University of Auckland co-authors: Peter Hunter
  • Nickerson, D. P., Garny, A., Nielsen, P. M. F., & Hunter, P. J. (2013). Standards and tools supporting collaborative development of the virtual physiological human. Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, 5541-5544. Osaka. 10.1109/EMBC.2013.6610805
    Other University of Auckland co-authors: Peter Hunter, Poul Nielsen, David Nickerson
  • Hunter, P., Bradley, C., Britten, R., Brooks, D., Carotenuto, L., Christie, R., ... Little, C. (2012). The VPH-Physiome project: Standards, tools and databases for multi-scale physiological modelling. In D. Ambrosi, A. Quarteroni, G. Rozza (Eds.) Modelling of physiological flows (pp. 205-250). Milan, Italy: Springer Milan. 10.1007/978-88-470-1935-5_8
    Other University of Auckland co-authors: Tommy Yu, Peter Hunter, Poul Nielsen, Christopher Bradley, David Nickerson, Alistair Young, Richard Christie, David Brooks
  • Niederer, S. A., Kerfoot, E., Benson, A. P., Bernabeu, M. O., Bernus, O., Bradley, C., ... Garny, A. (2011). Verification of cardiac tissue electrophysiology simulators using an N-version benchmark. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 369 (1954), 4331-4351. 10.1098/rsta.2011.0139
    Other University of Auckland co-authors: Christopher Bradley, Nic Smith
  • Quinn, T. A., Granite, S., Allessie, M. A., Antzelevitch, C., Bollensdorff, C., Bub, G., ... Delmar, M. (2011). Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics and Molecular Biology, in press.10.1016/j.pbiomolbio.2011.07.001
    Other University of Auckland co-authors: Peter Hunter

Contact details

Primary office location

UNISERVICES HOUSE - Bldg 439
Level 6, Room 601
70 SYMONDS ST
AUCKLAND 1010
New Zealand