Dr Tommi Vatanen

Profile image
Research Fellow

Selected publications and creative works (Research Outputs)

  • Stewart, C. J., Ajami, N. J., O'Brien JL, Hutchinson, D. S., Smith, D. P., Wong, M. C., ... Metcalf, G. A. (2018). Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature, 562 (7728), 583-588. 10.1038/s41586-018-0617-x
  • Vatanen, T., Franzosa, E. A., Schwager, R., Tripathi, S., Arthur, T. D., Vehik, K., ... She, J.-X. (2018). The human gut microbiome in early-onset type 1 diabetes from the TEDDY study. Nature, 562 (7728), 589-594. 10.1038/s41586-018-0620-2
  • Mallick, H., Ma, S., Franzosa, E. A., Vatanen, T., Morgan, X. C., & Huttenhower, C. (2017). Experimental design and quantitative analysis of microbial community multiomics. Genome Biology, 18 (1)10.1186/s13059-017-1359-z
    URL: http://hdl.handle.net/2292/43481
  • Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A. D., Poon, T. W., ... Hämäläinen A-M (2017). Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children. Proceedings of the National Academy of Sciences of the United States of America, 114 (30), E6166-E6175. 10.1073/pnas.1706359114
    URL: http://hdl.handle.net/2292/43513
  • Vaughn, B. P., Vatanen, T., Allegretti, J. R., Bai, A., Xavier, R. J., Korzenik, J., ... Moss, A. C. (2016). Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn's disease. Inflammatory Bowel Diseases, 22 (9), 2182-2190. 10.1097/MIB.0000000000000893
    URL: http://hdl.handle.net/2292/43483
  • Yassour, M., Vatanen, T., Siljander, H., Hämäläinen A-M, Härkönen T, Ryhänen SJ, ... Gevers, D. (2016). Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Science Translational Medicine, 8 (343)10.1126/scitranslmed.aad0917
    URL: http://hdl.handle.net/2292/43484
  • Vatanen, T., Kostic, A. D., d'Hennezel E, Siljander, H., Franzosa, E. A., Yassour, M., ... Hämäläinen A-M (2016). Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans. Cell, 165 (4), 842-853. 10.1016/j.cell.2016.04.007
    URL: http://hdl.handle.net/2292/43517
  • Zhernakova, A., Kurilshikov, A., Bonder, M. J., Tigchelaar, E. F., Schirmer, M., Vatanen, T., ... Vieira-Silva, S. (2016). Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science, 352 (6285), 565-569. 10.1126/science.aad3369
    URL: http://hdl.handle.net/2292/43518