Dr Walter Xie

PhD

Biography

I am a PhD with excellent computing skills and a wealth of experience in all aspects of Computational Biology and Artificial Intelligence, especially in software development and data analysis for bioinformatic and phylogenetic problems.

Selected publications and creative works (Research Outputs)

  • Dopheide, A., Tooman, L. K., Grosser, S., Agabiti, B., Rhode, B., Xie, D., ... Drummond, A. J. (2019). Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data. Ecological applications : a publication of the Ecological Society of America, 29 (4)10.1002/eap.1877
    Other University of Auckland co-authors: Richard Newcomb, Thomas Buckley, Alexei Drummond
  • Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne S, Fourment, M., Gavryushkina, A., ... De Maio, N. (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS computational biology, 15 (4)10.1371/journal.pcbi.1006650
    Other University of Auckland co-authors: Alexei Drummond, Remco Bouckaert, Fabio Henrique Kuriki Mendes
  • Dopheide, A., Xie, D., Buckley, T. R., Drummond, A. J., & Newcomb, R. D. (2019). Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity. METHODS IN ECOLOGY AND EVOLUTION, 10 (1), 120-133. 10.1111/2041-210X.13086
    URL: http://hdl.handle.net/2292/47187
    Other University of Auckland co-authors: Alexei Drummond, Thomas Buckley, Richard Newcomb
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Systematic biology, 67 (5), 901-904. 10.1093/sysbio/syy032
    Other University of Auckland co-authors: Alexei Drummond
  • Ogilvie, H. A., Heled, J., Xie, D., & Drummond, A. J. (2016). Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods. Systematic Biology, 65 (3), 381-396. 10.1093/sysbio/syv118
    Other University of Auckland co-authors: Alexei Drummond
  • Drummond, A. J., Newcomb, R. D., Buckley, T. R., Xie, D., Dopheide, A., Potter, B. C. M., ... Grosser, S. (2015). Evaluating a multigene environmental DNA approach for biodiversity assessment. GigaScience, 4 (1)10.1186/s13742-015-0086-1
    Other University of Auckland co-authors: Richard Newcomb, Thomas Buckley, Alexei Drummond, James Russell, Sandra Anderson
  • Bouckaert, R., Heled, J., Kühnert D, Vaughan, T., Wu, C. H., Xie, D., ... Drummond, A. J. (2014). BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 10 (4), 1-6. 10.1371/journal.pcbi.1003537
    Other University of Auckland co-authors: Remco Bouckaert, Alexei Drummond
  • Stadler, T., Kouyos, R., von Wyl, V., Yerly, S., Böni J, Bürgisser P, ... Xie, D. (2012). Estimating the Basic Reproductive Number from Viral Sequence Data. Molecular Biology and Evolution, 29 (1), 347-357. 10.1093/molbev/msr217
    Other University of Auckland co-authors: Alexei Drummond

Identifiers

Contact details

Primary office location

1-11 SHORT STREET - Bldg 810
Level 8, Room 831
1-11 SHORT ST
AUCKLAND CENTRAL
AUCKLAND 1010
New Zealand

Web links