Dr Simone Linz

MSc, PhD

Senior Lecturer

In: School of Computer Science » Faculty of Science

Biography

Simone Linz is a Senior Lecturer in the School of Computer Science at the University of Auckland and an Associate Investigator of Te Pūnaha Matatini - The Centre for Complex Systems and Networks (CoRE).

Prior to joining the University of Auckland, she was a Marie Curie Fellow in the School of Mathematics and Statistics at the University of Canterbury and in the Center for Bioinformatics at the University of Tübingen, funded by a Marie Curie International Outgoing Fellowship and awarded by the European Commission.

For more details, see my external homepage.

Research | Current

Mathematical and computational biology; in particular algorithmic and combinatorial problems arising in phylogenetics, i.e. the reconstruction and analysis of evolutionary trees and networks.

Teaching | Current

2019 S1 COMPSCI 720

2109 S2 COMPSCI 120

All teaching material is available on Canvas.

Postgraduate supervision

Current PhD students:

Jonathan Klawitter
Nguyet Tran

Distinctions/Honours

2015 Marsden Fund Fast-Start Grant (PI) for three years, awarded by the Royal Society of New Zealand.

2015 Selected participant of the year-long Women in Leadership Programme 2016 at the University of Auckland.

2011 Marie Curie International Outgoing Fellowship for three years, awarded by the European Commission.

Responsibilities

Computer Science Tuakana coordinator.

Computer Science Stage-2 coordinator.

Selected publications and creative works (Research Outputs)

Linz, S., & Semple, C. (2019). Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies. Advances in Applied Mathematics, 105, 102-129. 10.1016/j.aam.2019.01.004
Döcker J, van Iersel, L., Kelk, S., & Linz, S. (2019). Deciding the existence of a cherry-picking sequence is hard on two trees. Discrete Applied Mathematics10.1016/j.dam.2019.01.031
Döcker J, & Linz, S. (2017). On the existence of a cherry-picking sequence. Theoretical Computer Science10.1016/j.tcs.2017.12.005
URL: http://hdl.handle.net/2292/42471
Bordewich, M., Linz, S., & Semple, C. (2017). Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks. Journal of Theoretical Biology, 423, 1-12. 10.1016/j.jtbi.2017.03.032
URL: http://hdl.handle.net/2292/41370
Bryant, C., Fischer, M., Linz, S., & Semple, C. (2017). On the quirks of maximum parsimony and likelihood on phylogenetic networks. Journal of Theoretical Biology, 417, 100-108. 10.1016/j.jtbi.2017.01.013
URL: http://hdl.handle.net/2292/32995
Huson, D., & Linz, S. (2016). Autumn algorithm: Computation of hybridization networks for realistic phylogenetic trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics10.1109/TCBB.2016.2537326
URL: http://hdl.handle.net/2292/41985
Huber, K. T., Linz, S., Moulton, V., & Wu, T. (2016). Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations. Journal of Mathematical Biology, 72 (3), 699-725. 10.1007/s00285-015-0899-7
URL: http://hdl.handle.net/2292/29642
van Iersel, L., Kelk, S., Lekić N, & Linz, S. (2016). Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees. Theoretical Computer Science, 609 (1), 1-21. 10.1016/j.tcs.2015.06.021
URL: http://hdl.handle.net/2292/28141