Dr Simone Linz
Simone Linz is a Senior Lecturer in the School of Computer Science at the University of Auckland and an Associate Investigator of Te Pūnaha Matatini - The Centre for Complex Systems and Networks (CoRE).
Prior to joining the University of Auckland, she was a Marie Curie Fellow in the School of Mathematics and Statistics at the University of Canterbury and in the Center for Bioinformatics at the University of Tübingen, funded by a Marie Curie International Outgoing Fellowship and awarded by the European Commission.
For more details, see my external homepage.
Research | Current
Mathematical and computational biology; in particular algorithmic and combinatorial problems arising in phylogenetics, i.e. the reconstruction and analysis of evolutionary trees and networks.
Teaching | Current
2019 S1 COMPSCI 720
2109 S2 COMPSCI 120
All teaching material is available on Canvas.
Current PhD students:
- Jonathan Klawitter
- Nguyet Tran
2015 Marsden Fund Fast-Start Grant (PI) for three years, awarded by the Royal Society of New Zealand.
2015 Selected participant of the year-long Women in Leadership Programme 2016 at the University of Auckland.
2011 Marie Curie International Outgoing Fellowship for three years, awarded by the European Commission.
Computer Science Tuakana coordinator.
Computer Science Stage-2 coordinator.
Selected publications and creative works (Research Outputs)
- Linz, S., & Semple, C. (2019). Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies. Advances in Applied Mathematics, 105, 102-129. 10.1016/j.aam.2019.01.004
- Döcker J, van Iersel, L., Kelk, S., & Linz, S. (2019). Deciding the existence of a cherry-picking sequence is hard on two trees. Discrete Applied Mathematics10.1016/j.dam.2019.01.031
- Döcker J, & Linz, S. (2017). On the existence of a cherry-picking sequence. Theoretical Computer Science10.1016/j.tcs.2017.12.005
- Bordewich, M., Linz, S., & Semple, C. (2017). Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks. Journal of Theoretical Biology, 423, 1-12. 10.1016/j.jtbi.2017.03.032
- Bryant, C., Fischer, M., Linz, S., & Semple, C. (2017). On the quirks of maximum parsimony and likelihood on phylogenetic networks. Journal of Theoretical Biology, 417, 100-108. 10.1016/j.jtbi.2017.01.013
- Huson, D., & Linz, S. (2016). Autumn algorithm: Computation of hybridization networks for realistic phylogenetic trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics10.1109/TCBB.2016.2537326
- Huber, K. T., Linz, S., Moulton, V., & Wu, T. (2016). Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations. Journal of Mathematical Biology, 72 (3), 699-725. 10.1007/s00285-015-0899-7
- van Iersel, L., Kelk, S., Lekić N, & Linz, S. (2016). Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees. Theoretical Computer Science, 609 (1), 1-21. 10.1016/j.tcs.2015.06.021