Dr Tommi Vatanen

PhD in computational biology

Senior Research Fellow

In: Liggins Institute

Selected publications and creative works (Research Outputs)

Vatanen, T., Plichta, D. R., Somani, J., Münch PC, Arthur, T. D., Hall, A. B., ... Young, R. A. (2019). Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Nature microbiology, 4 (3), 470-479. 10.1038/s41564-018-0321-5
URL: http://hdl.handle.net/2292/46209
Stewart, C. J., Ajami, N. J., O'Brien JL, Hutchinson, D. S., Smith, D. P., Wong, M. C., ... Metcalf, G. A. (2018). Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature, 562 (7728), 583-588. 10.1038/s41586-018-0617-x
URL: http://hdl.handle.net/2292/45880
Vatanen, T., Franzosa, E. A., Schwager, R., Tripathi, S., Arthur, T. D., Vehik, K., ... She, J.-X. (2018). The human gut microbiome in early-onset type 1 diabetes from the TEDDY study. Nature, 562 (7728), 589-594. 10.1038/s41586-018-0620-2
URL: http://hdl.handle.net/2292/46204
Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A. D., Poon, T. W., ... Hämäläinen A-M (2017). Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children. Proceedings of the National Academy of Sciences of the United States of America, 114 (30), E6166-E6175. 10.1073/pnas.1706359114
URL: http://hdl.handle.net/2292/43513
Vaughn, B. P., Vatanen, T., Allegretti, J. R., Bai, A., Xavier, R. J., Korzenik, J., ... Moss, A. C. (2016). Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn's disease. Inflammatory Bowel Diseases, 22 (9), 2182-2190. 10.1097/MIB.0000000000000893
URL: http://hdl.handle.net/2292/43483
Yassour, M., Vatanen, T., Siljander, H., Hämäläinen A-M, Härkönen T, Ryhänen SJ, ... Gevers, D. (2016). Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Science Translational Medicine, 8 (343)10.1126/scitranslmed.aad0917
URL: http://hdl.handle.net/2292/43484
Vatanen, T., Kostic, A. D., d'Hennezel E, Siljander, H., Franzosa, E. A., Yassour, M., ... Hämäläinen A-M (2016). Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans. Cell, 165 (4), 842-853. 10.1016/j.cell.2016.04.007
URL: http://hdl.handle.net/2292/43517